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1

Conversion of Xylose to Ethanol by Recombinant Saccharomyces cerevisiae: Importance of Xylulokinase (XKS1) and Oxygen Availability

Mervi H. Toivari, Aristos Aristidou, Laura Ruohonen, Merja Penttilä

Journal:

Metabolic Engineering

Year:

2001

Language:

english

File:

PDF, 331 KB

english, 2001

2

Molecular cloning and analysis of the yeast flocculation gene FLO1

Junji Watari, Yoshihiro Takata, Masahiro Ogawa, Hirohisa Sahara, Shohei Koshino, Maija-Leena Onnela, Ulla Airaksinen, Risto Jaatinen, Merja Penttilä, Sirkka Keränen

Journal:

Year:

1994

Language:

english

File:

PDF, 1.08 MB

english, 1994

3

Production of ethanol from L-arabinose by Saccharomyces cerevisiae containing a fungal L-arabinose pathway

Peter Richard, Ritva Verho, Mikko Putkonen, John Londesborough, Merja Penttilä

Journal:

FEMS Yeast Research

Year:

2003

Language:

english

File:

PDF, 176 KB

english, 2003

4

Characterisation of the gene cluster for l-rhamnose catabolism in the yeast Scheffersomyces (Pichia) stipitis

Outi M. Koivistoinen, Mikko Arvas, Jennifer R. Headman, Martina Andberg, Merja Penttilä, Thomas W. Jeffries, Peter Richard

Journal:

Year:

2012

Language:

english

File:

PDF, 702 KB

english, 2012

5

Efficient Production of Antibody Fragments by the Filamentous Fungus Trichoderma reesei

Nyyssönen, Eini, Penttilä, Merja, Harkki, Anu, Saloheimo, Anu, Knowles, Jonathan K. C., Keränen, Sirkka

Journal:

Year:

1993

File:

PDF, 815 KB

1993

6

Recent advances in the malting and brewing industry

Matti Linko, Auli Haikara, Anneli Ritala, Merja Penttilä

Journal:

Journal of Biotechnology

Year:

1998

Language:

english

File:

PDF, 237 KB

english, 1998

7

In vitro synthesis and self-assembly of cellulose II nanofibrils catalyzed by the reverse reaction of Clostridium thermocellum cellodextrin phosphorylase

PylkkÃ¤nen, Robert, Mohammadi, Pezhman, Arola, Suvi, de Ruijter, Jorg, Sunagawa, Naoki, Igarashi, Kiyo, PenttilÃ¤, Merja

Journal:

Biomacromolecules

Year:

2020

File:

PDF, 2.14 MB

2020

8

Primary recovery of a genetically engineered Trichoderma reesei endoglucanase I (Cel 7B) fusion protein in cloud point extraction systems

Anna Collén, Klaus Selber, Teppo Hyytiä, Josefine Persson, Tiina Nakari-Setlä, Michael Bailey, Richard Fagerström, Maria-Regina Kula, Merja Penttilä, Henrik Stålbrand, Folke Tjerneld

Journal:

Biotechnology and Bioengineering

Year:

2002

Language:

english

File:

PDF, 176 KB

english, 2002

9

Protein production and induction of the unfolded protein response in Trichoderma reesei strain Rut-C30 and its transformant expressing endoglucanase I with a hydrophobic tag

Anna Collén, Markku Saloheimo, Michael Bailey, Merja Penttilä, Tiina M. Pakula

Journal:

Biotechnology and Bioengineering

Year:

2005

Language:

english

File:

PDF, 614 KB

english, 2005

10

Identification and Quantitation of Phosphorus Metabolites in Yeast Neutral pH Extracts by Nuclear Magnetic Resonance Spectroscopy

Anita Teleman, Peter Richard, Mervi Toivari, Merja Penttilä

Journal:

Analytical Biochemistry

Year:

1999

Language:

english

File:

PDF, 114 KB

english, 1999

11

Genetic engineering of Trichoderma to produce strains with novel cellulase profiles

Anu Harkki, Arja Mäntylä, Merja Penttilä, Susanna Muttilainen, Rolf Bühler, Pirkko Suominen, Jonathan Knowles, Helena Nevalainen

Journal:

Enzyme and Microbial Technology

Year:

1991

Language:

english

File:

PDF, 661 KB

english, 1991

12

Expression of Vitreoscilla hemoglobin improves the metabolism of xylose in recombinant yeast Saccharomyces cerevisiae under low oxygen conditions

Laura Ruohonen, Aristos Aristidou, Alexander D. Frey, Merja Penttilä, Pauli T. Kallio

Journal:

Enzyme and Microbial Technology

Year:

2006

Language:

english

File:

PDF, 200 KB

english, 2006

13

Production of recombinant proteins in the filamentous fungus Trichoderma reesei

Sirkka Keränen, Merja Penttilä

Journal:

Current Opinion in Biotechnology

Year:

1995

Language:

english

File:

PDF, 393 KB

english, 1995

14

Capillary electrophoresis for the monitoring of carboxylic acid production by Gluconobacter oxydans

Heidi Turkia, Heli Sirén, Juha-Pekka Pitkänen, Marilyn Wiebe, Merja Penttilä

Journal:

Journal of Chromatography A

Year:

2010

Language:

english

File:

PDF, 463 KB

english, 2010

15

The Trichoderma reesei hydrophobin genes hfb1 and hfb2 have diverse functions in fungal development

Sanna Askolin, Merja Penttilä, Han A.B. Wösten, Tiina Nakari-Setälä

Journal:

FEMS Microbiology Letters

Year:

2005

Language:

english

File:

PDF, 255 KB

english, 2005

16

Transcriptional regulation of plant cell wall degradation by filamentous fungi

Nina Aro, Tiina Pakula, Merja Penttilä

Journal:

FEMS Microbiology Reviews

Year:

2005

Language:

english

File:

PDF, 345 KB

english, 2005

17

Bioconversion of d-xylose to d-xylonate with Kluyveromyces lactis

Yvonne Nygård, Mervi H. Toivari, Merja Penttilä, Laura Ruohonen, Marilyn G. Wiebe

Journal:

Metabolic Engineering

Year:

2011

Language:

english

File:

PDF, 702 KB

english, 2011

18

Extraction of endoglucanase I (Cel7B) fusion proteins from Trichoderma reesei culture filtrate in a poly(ethylene glycol)–phosphate aqueous two-phase system

Anna Collén, Merja Penttilä, Henrik Stålbrand, Folke Tjerneld, Andres Veide

Journal:

Journal of Chromatography A

Year:

2002

Language:

english

File:

PDF, 454 KB

english, 2002

19

Large-scale separation and production of engineered proteins, designed for facilitated recovery in detergent-based aqueous two-phase extraction systems

Klaus Selber, Folke Tjerneld, Anna Collén, Teppo Hyytiä, Tiina Nakari-Setälä, Michael Bailey, Richard Fagerström, John Kan, Joop van der Laan, Merja Penttilä, Maria-Regina Kula

Journal:

Process Biochemistry

Year:

2004

Language:

english

File:

PDF, 214 KB

english, 2004

20

Metabolic engineering applications to renewable resource utilization

Aristos Aristidou, Merja Penttilä

Journal:

Current Opinion in Biotechnology

Year:

2000

Language:

english

File:

PDF, 295 KB

english, 2000

21

Metabolic flux analysis of xylose metabolism in recombinant Saccharomyces cerevisiae using continuous culture

Juha-Pekka Pitkänen, Aristos Aristidou, Laura Salusjärvi, Laura Ruohonen, Merja Penttilä

Journal:

Metabolic Engineering

Year:

2003

Language:

english

File:

PDF, 354 KB

english, 2003

22

Homologous expression and characterization of Cel61A (EG IV) of Trichoderma reesei

Johan Karlsson, Markku Saloheimo, Matti Siika-aho, Maija Tenkanen, Merja Penttilä, Folke Tjerneld

Journal:

Year:

2001

Language:

english

File:

PDF, 371 KB

english, 2001

23

Interactions of the Trichoderma reesei rho3 with the secretory pathway in yeast and T. reesei

Tuija Vasara, Laura Salusjärvi, Marjatta Raudaskoski, Sirkka Keränen, Merja Penttilä, Markku Saloheimo

Journal:

Molecular Microbiology

Year:

2001

Language:

english

File:

PDF, 1.52 MB

english, 2001

24

Activation mechanisms of the HACI-mediated unfolded protein response in filamentous fungi

Markku Saloheimo, Mari Valkonen, Merja Penttilä

Journal:

Molecular Microbiology

Year:

2003

Language:

english

File:

PDF, 488 KB

english, 2003

25

Swollenin, a Trichoderma reesei protein with sequence similarity to the plant expansins, exhibits disruption activity on cellulosic materials

Markku Saloheimo, Marja Paloheimo, Satu Hakola, Jaakko Pere, Barbara Swanson, Eini Nyyssönen, Amit Bhatia, Michael Ward, Merja Penttilä

Journal:

Year:

2002

Language:

english

File:

PDF, 332 KB

english, 2002

26

Correlation of gene expression and protein production rate - a system wide study

Mikko Arvas, Tiina Pakula, Bart Smit, Jari Rautio, Heini Koivistoinen, Paula Jouhten, Erno Lindfors, Marilyn Wiebe, Merja Penttilä, Markku Saloheimo

Journal:

Year:

2011

Language:

english

File:

PDF, 1.17 MB

english, 2011

27

Bioconversion of D-galacturonate to keto-deoxy-L-galactonate (3-deoxy-L-threo-hex-2-ulosonate) using filamentous fungi

Marilyn G Wiebe, Dominik Mojzita, Satu Hilditch, Laura Ruohonen, Merja Penttilä

Journal:

BMC Biotechnology

Year:

2010

Language:

english

File:

PDF, 1.16 MB

english, 2010

28

Physiological evaluation of the filamentous fungusTrichoderma reeseiin production processes by marker gene expression analysis

Jari J Rautio, Michael Bailey, Teemu Kivioja, Hans Söderlund, Merja Penttilä, Markku Saloheimo

Journal:

BMC Biotechnology

Year:

2007

Language:

english

File:

PDF, 2.07 MB

english, 2007

29

The effects of disruption of phosphoglucose isomerase gene on carbon utilisation and cellulase production inTrichoderma reeseiRut-C30

M Carmen Limón, Tiina Pakula, Markku Saloheimo, Merja Penttilä

Journal:

Microbial Cell Factories

Year:

2011

Language:

english

File:

PDF, 7.90 MB

english, 2011

30

Use of matrix-assisted laser desorption/ionization time-of-flight mass mapping and nanospray liquid chromatography/electrospray ionization tandem mass spectrometry sequence tag analysis for high sensitivity identification of yeast proteins separated by two-dimensional gel electrophoresis

Marjo Poutanen, Laura Salusjärvi, Laura Ruohonen, Merja Penttilä, Nisse Kalkkinen

Journal:

Rapid Communications in Mass Spectrometry

Year:

2001

Language:

english

File:

PDF, 240 KB

english, 2001

31

The ORF YNL274c (GOR1) codes for glyoxylate reductase in Saccharomyces cerevisiae

Eija Rintala, Juha-Pekka Pitkänen, Maija-Leena Vehkomäki, Merja Penttilä, Laura Ruohonen

Journal:

Year:

2007

Language:

english

File:

PDF, 177 KB

english, 2007

32

A short-chain dehydrogenase gene from Pichia stipitis having D-arabinitol dehydrogenase activity

Johan Hallborn, Mats Walfridsson, Merja Penttilä, Sirkka Keränen, Bärbel Hahn-hägerdal

Journal:

Year:

1995

Language:

english

File:

PDF, 885 KB

english, 1995

33

Proteome analysis of recombinant xylose-fermenting Saccharomyces cerevisiae

Laura Salusjärvi, Marjo Poutanen, Juha-Pekka Pitkänen, Heini Koivistoinen, Aristos Aristidou, Nisse Kalkkinen, Laura Ruohonen, Merja Penttilä

Journal:

Year:

2003

Language:

english

File:

PDF, 450 KB

english, 2003

34

Electrophoretic karyotyping of wild-type and mutantTrichoderma longibrachiatum (reesei)strains

Arja L. Mäntylä, K. Hannele Rossi, Sirpa A. Vanhanen, Merja E. Penttilä, Pirkko L. Suominen, K. M. Helena Nevalainen

Journal:

Current Genetics

Year:

1992

Language:

english

File:

PDF, 1.17 MB

english, 1992

35

The cellulase genes ofTrichoderma

Jonathan Knowles, Päivi Lehtovaara, Merja Penttilä, Tuula Teeri, Anu Harkki, Irma Salovuori

Journal:

Antonie van Leeuwenhoek

Year:

1987

Language:

english

File:

PDF, 385 KB

english, 1987

36

Xylose chemostat isolates ofSaccharomyces cerevisiaeshow altered metabolite and enzyme levels compared with xylose, glucose, and ethanol metabolism of the original strain

Juha-Pekka Pitkänen, Eija Rintala, Aristos Aristidou, Laura Ruohonen, Merja Penttilä

Journal:

Applied Microbiology and Biotechnology

Year:

2005

Language:

english

File:

PDF, 409 KB

english, 2005

37

Xylose transport studies with xylose-utilizingSaccharomyces cerevisiaestrains expressing heterologous and homologous permeases

Anu Saloheimo, Jenita Rauta, Oleh V. Stasyk, Andrei A. Sibirny, Merja Penttilä, Laura Ruohonen

Journal:

Applied Microbiology and Biotechnology

Year:

2007

Language:

english

File:

PDF, 452 KB

english, 2007

38

Enhancing the flux of D-glucose to the pentose phosphate pathway inSaccharomyces cerevisiaefor the production of D-ribose and ribitol

Mervi H. Toivari, Hannu Maaheimo, Merja Penttilä, Laura Ruohonen

Journal:

Applied Microbiology and Biotechnology

Year:

2010

Language:

english

File:

PDF, 591 KB

english, 2010

39

Identification inAgrobacterium tumefaciensof thed-galacturonic acid dehydrogenase gene

Harry Boer, Hannu Maaheimo, Anu Koivula, Merja Penttilä, Peter Richard

Journal:

Applied Microbiology and Biotechnology

Year:

2010

Language:

english

File:

PDF, 250 KB

english, 2010

40

Expression ofTrichoderma reeseicellulases CBHI and EGI inAshbya gossypii

Orquídea Ribeiro, Marilyn Wiebe, Marja Ilmén, Lucília Domingues, Merja Penttilä

Journal:

Applied Microbiology and Biotechnology

Year:

2010

Language:

english

File:

PDF, 353 KB

english, 2010

41

Saccharomyces cerevisiaeengineered to produce D-xylonate

Mervi H. Toivari, Laura Ruohonen, Peter Richard, Merja Penttilä, Marilyn G. Wiebe

Journal:

Applied Microbiology and Biotechnology

Year:

2010

Language:

english

File:

PDF, 351 KB

english, 2010

42

cDNA encoding protein O-mannosyltransferase from the filamentous fungusTrichoderma reesei; functional equivalence toSaccharomyces cerevisiae PMT2

Anna Zakrzewska, Andrzej Migdalski, Markku Saloheimo, Merja E. Penttila, Grażyna Palamarczyk, Joanna S. Kruszewska

Journal:

Current Genetics

Year:

2003

Language:

english

File:

PDF, 533 KB

english, 2003

43

Laccase from the white-rot fungus Trametes versicolor: cDNA cloning of lcc1 and expression in Pichia pastoris

L. J. Jönsson, Markku Saloheimo, Merja Penttilä

Journal:

Current Genetics

Year:

1997

Language:

english

File:

PDF, 412 KB

english, 1997

44

Isolation of a Trichoderma reesei cDNA encoding GTP: a-d-mannose-1-phosphate guanyltransferase involved in early steps of protein glycosylation

Joanna S. Kruszewska, Markku Saloheimo, Merja Penttilä, Grażyna Palamarczyk

Journal:

Current Genetics

Year:

1998

Language:

english

File:

PDF, 194 KB

english, 1998

45

Trichoderma reeseirho3, a homologue of yeastRHO3, suppresses the growth defect of yeastsec15-1mutation

Tuija Vasara, Markku Saloheimo, Sirkka Keränen, Merja Penttilä

Journal:

Current Genetics

Year:

2001

Language:

english

File:

PDF, 278 KB

english, 2001

46

Overexpression of an Endochitinase Gene (ThEn-42) inTrichoderma atroviridefor Increased Production of Antifungal Enzymes and Enhanced Antagonist Action Against Pathogenic Fungi

Shiping Deng, Matteo Lorito, Merja Penttilä, Gary E. Harman

Journal:

Applied Biochemistry and Biotechnology

Year:

2007

Language:

english

File:

PDF, 300 KB

english, 2007

47

Cloning of Two Genes (LAT1,2) Encoding Specificl-Arabinose Transporters of thel-Arabinose Fermenting YeastAmbrosiozyma monospora

Ritva Verho, Merja Penttilä, Peter Richard

Journal:

Applied Biochemistry and Biotechnology

Year:

2011

Language:

english

File:

PDF, 213 KB

english, 2011

48

Hydrophobins: the protein-amphiphiles of filamentous fungi

Markus B. Linder, Géza R. Szilvay, Tiina Nakari-Setälä, Merja E. Penttilä

Journal:

FEMS Microbiology Reviews

Year:

2005

Language:

english

File:

PDF, 1.58 MB

english, 2005

49

A novel, small endoglucanase gene, egl5, from Trichoderma reesei isolated by expression in yeast

Anu Saloheimo, Bernard Henrissat, Anna-Marja Hoffrén, Olle Teleman, Merja Penttilä

Journal:

Molecular Microbiology

Year:

1994

Language:

english

File:

PDF, 4.65 MB

english, 1994

50

Endoplasmic reticulum stress leads to the selective transcriptional downregulation of the glucoamylase gene in Aspergillus niger

Hashem Al-Sheikh, Adrian J. Watson, Georgina A. Lacey, Peter J. Punt, Donald A. MacKenzie, David J. Jeenes, Tiina Pakula, Merja Penttilä, Marcos J. C. Alcocer, David B. Archer

Journal:

Molecular Microbiology

Year:

2004

Language:

english

File:

PDF, 219 KB

english, 2004

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